Difference between revisions of "Papers, Presentations, Theses, Proposals, and Patents"
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Here are links to our research output. When several version of a paper were published, for instance one in conference proceedings and another in a journal, these are grouped together and only the most significant version is linked. All materials are subject to copyrights. | Here are links to our research output. When several version of a paper were published, for instance one in conference proceedings and another in a journal, these are grouped together and only the most significant version is linked. All materials are subject to copyrights. | ||
== Storing with Molecules == | == Storing with Molecules == | ||
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| [[Ajay Manicka]], Andrew Stephan, Sriram Chari, Gemma Mendonsa,<br>Peyton Okubo, John Stolzberg-Schray, Anil Reddy, and [[Marc Riedel]] | | [[Ajay Manicka]], Andrew Stephan, Sriram Chari, Gemma Mendonsa,<br>Peyton Okubo, John Stolzberg-Schray, Anil Reddy, and [[Marc Riedel]] | ||
|- valign="top" | |- valign="top" | ||
| ''' | | '''appeared in''': | ||
| [https://pubs.rsc.org/en/content/articlepdf/2023/DD/D3DD00083D?page=search Royal Society of Chemistry – Digital Discovery], 2023 | | [https://pubs.rsc.org/en/content/articlepdf/2023/DD/D3DD00083D?page=search Royal Society of Chemistry – Digital Discovery], Vol. 2, pp. 1436–1451, 2023 | ||
|} | |} | ||
| width="70" align="center" | | | width="70" align="center" | | ||
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|- valign="top" | |- valign="top" | ||
| '''to appear in''': | | '''to appear in''': | ||
| [https:// | | [https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0292228 PLOS One], Vol. 18, No. 10, 2023 | ||
|} | |} | ||
| width="70" align="center" | | | width="70" align="center" | | ||
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|- valign="top" | |- valign="top" | ||
| ''' | | '''appeared''': | ||
| [https://www.springer.com/journal/11047 Natural Computing], 2023 | | [https://www.springer.com/journal/11047 Natural Computing], 2023 | ||
|- valign="top" | |- valign="top" | ||
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|- valign="top" | |- valign="top" | ||
| '''appeared as''': | | '''appeared as''': | ||
| | | [http://pubs.acs.org/journal/asbcd6 ACS Synthetic Biology], Vol. 6, No. 1, pp. 76–83, 2017 | ||
|- valign="top" | |- valign="top" | ||
| '''presented at''': | | '''presented at''': | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [[Media: | | width="500" | [https://mriedel.ece.umn.edu/wiki/images/2/2d/Atkins_Solanki_Vasmatzis_Cornette_Riedel_Geographically_Biased_Composition_of_NetMHCpan_Training_Datasets_and_Evaluation_of_MHC-Peptide_Binding_Prediction_Accuracy_on_Novel_Alleles.pdf Geographically Biased Composition of NetMHCpan Training Datasets and Evaluation of MHC-Peptide] | ||
|- valign="top" | |||
| '''authors''': | |||
| Thomas Atkins, [[Arnav Solanki]], [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis], [https://orion.math.iastate.edu/cornette/ James Cornette], and [[Marc Riedel]] | |||
|- valign="top" | |||
| '''appeared in''': | |||
| [https://www.frontiersin.org/journals/immunology Frontiers in Immunology], Vol. 14, 2023 | |||
|} | |||
| align="center" width="70" | | |||
<span class="plainlinks"> | |||
[https://www.frontiersin.org/articles/10.3389/fimmu.2023.1288105/full http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[https://www.frontiersin.org/articles/10.3389/fimmu.2023.1288105/full Paper] | |||
|} | |||
{| | |||
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{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf|Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant]] | |||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis] | | [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis] | ||
|- valign="top" | |- valign="top" | ||
| ''' | | '''appeared in''': | ||
| [https://ieeexplore.ieee.org/ | | [https://ieeexplore.ieee.org/document/10457533 IEEE/ACM Trans. on Computational Biology and Bioinformatics], pp. 1–11, March, 2024 | ||
|} | |} | ||
| width="70" align="center" | | | width="70" align="center" | | ||
<span class="plainlinks"> | <span class="plainlinks"> | ||
[https://mriedel.ece.umn.edu/wiki/images/1/ | [https://mriedel.ece.umn.edu/wiki/images/1/12/Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br> | <br> | ||
[[Media: | [[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf | Paper]] | ||
|} | |} | ||
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|- valign="top" | |- valign="top" | ||
| '''presented at''': | | '''presented at''': | ||
| [http://ismco.net/ | | [http://ismco.net/International Symposium on Mathematical and Computational Oncology], 2021 | ||
|} | |} | ||
| width="70" align="center" | | | width="70" align="center" | | ||
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| [[Yadu Kiran]] and [[Marc Riedel]] | | [[Yadu Kiran]] and [[Marc Riedel]] | ||
|- valign="top" | |- valign="top" | ||
| '''presented at''': | |||
| ''' presented at''': | |||
| [https://dl.acm.org/doi/proceedings/10.1145/3526241 IEEE/ACM Great Lakes Symposium on VLSI], 2022 | | [https://dl.acm.org/doi/proceedings/10.1145/3526241 IEEE/ACM Great Lakes Symposium on VLSI], 2022 | ||
|} | |} | ||
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<span class="plainlinks"> | <span class="plainlinks"> | ||
[https://mriedel.ece.umn.edu/wiki/images/3/37/Kiran_Riedel_A_Scalable_Approach_to_Performing_Multiplication_and_Matrix_Dot-Products_in_Unary.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | [https://mriedel.ece.umn.edu/wiki/images/3/37/Kiran_Riedel_A_Scalable_Approach_to_Performing_Multiplication_and_Matrix_Dot-Products_in_Unary.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
[https://mriedel.ece.umn.edu/wiki/images/3/37/Kiran_Riedel_A_Scalable_Approach_to_Performing_Multiplication_and_Matrix_Dot-Products_in_Unary.pdf Paper] | |||
[ | | width="70" align="center" | | ||
|[ | <span class="plainlinks">[https://mriedel.ece.umn.edu/wiki/images/b/ba/Kiran_Riedel_A_Scalable_Deterministic_Approach_to_Stochastic_Computing.pptx http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span> | ||
<br>[https://mriedel.ece.umn.edu/wiki/images/b/ba/Kiran_Riedel_A_Scalable_Deterministic_Approach_to_Stochastic_Computing.pptx Slides] | |||
|} | |} | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [[Media:Zink | | width="500" | [[Media:Zink Riedel Karpuzcu Wang A Comparison Study of Spin Transfer Torque and Spin-Orbit Torque Based Stochastic Computing Using Computational Random Access Memory SC-CRAM.pdf|A Comparison Study of Spin Transfer Torque and Spin-Orbit Torque Based Stochastic Computing Using Computational Random Access Memory (SC-CRAM)]] | ||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
| | | [https://nanospin.umn.edu/people/brandon-zink Brandon Zink], [[Marc Riedel]], [https://www.ece.umn.edu/~ukarpuzc/Karpuzcu.html Ulya Karpuzcu] and [https://nanospin.umn.edu/people/jian-ping-wang Jian-Ping Wang] | ||
|- valign="top" | |- valign="top" | ||
| '''appeared in''': | | '''appeared in''': | ||
| [https://ieeexplore.ieee.org/ | | [https://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=20 IEEE Transactions on Magnetics], 2023 | ||
|- valign="top" | |||
| '''presented at''': | |||
| [https://ieeemagnetics.org/event/conference/34th-magnetic-recording-conference IEEE Magnetics Recording Conference], 2023 | |||
|} | |} | ||
| | | align="center" width="70" | | ||
<span class="plainlinks"> | <span class="plainlinks"> | ||
[https://mriedel.ece.umn.edu/wiki/images/ | [https://mriedel.ece.umn.edu/wiki/images/4/41/Zink_Riedel_Karpuzcu_Wang_A_Comparison_Study_of_Spin_Transfer_Torque_and_Spin-Orbit_Torque_Based_Stochastic_Computing_Using_Computational_Random_Access_Memory_SC-CRAM.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br> | <br> | ||
[[Media: | [[Media:Zink_Riedel_Karpuzcu_Wang_A_Comparison_Study_of_Spin_Transfer_Torque_and_Spin-Orbit_Torque_Based_Stochastic_Computing_Using_Computational_Random_Access_Memory_SC-CRAM.pdf | Paper]] | ||
|} | |} | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [[Media: | | width="500" | [[Media:Zink Lv Zabihi Cilasun Sapatnekar Karpuzcu Riedel Wang A Stochastic Computing Scheme of Embedding Random Bit Generation and Processing in Computational Random Access Memory SC-CRAM.pdf|A Stochastic Computing Scheme of Embedding_Random Bit Generation and Processing in Computational Random Access Memory (SC-CRAM)]] | ||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
| | | [https://nanospin.umn.edu/people/brandon-zink Brandon Zink], Yang Lv, Masoud Zabihi, Husrev Cilasun , [http://people.ece.umn.edu/users/sachin/ Sachin Sapatnekar],<br>[http://people.ece.umn.edu/~ukarpuzc/Karpuzcu.html Ulya Karpuzcu], [[Marc Riedel]], and [https://nanospin.umn.edu/people/jian-ping-wang Jian-Ping Wang] | ||
|- valign="top" | |- valign="top" | ||
| '''appeared in''': | | '''appeared in''': | ||
| [https://ieeexplore.ieee.org/document/9714013 IEEE_Micro], Vol. 42, No. 3, pp. 40–49, 2022 | | [https://ieeexplore.ieee.org/document/10099030 IEEE Journal on Exploratory Solid-State Computational Devices and Circuits],<br>Vol. 9, No. 1, pp. p. 29–37, 2023 | ||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks"> | |||
[https://mriedel.ece.umn.edu/wiki/images/5/5f/Zink_Lv_Zabihi_Cilasun_Sapatnekar_Karpuzcu_Riedel_Wang_A_Stochastic_Computing_Scheme_of_Embedding_Random_Bit_Generation_and_Processing_in_Computational_Random_Access_Memory_SC-CRAM.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[[Media:Zink_Lv_Zabihi_Cilasun_Sapatnekar_Karpuzcu_Riedel_Wang_A_Stochastic_Computing_Scheme_of_Embedding_Random_Bit_Generation_and_Processing_in_Computational_Random_Access_Memory_SC-CRAM.pdf | Paper]] | |||
|} | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [[Media:Ganguly Abadal Thakkar Jerger Riedel Babaie Balasubramonian Sebastian Pasricha Taskin Interconnects for DNA Quantum In-Memory and Optical Computing Insights From a Panel Discussion.pdf|Interconnects for DNA, Quantum, In-Memory, and Optical Computing]] | |||
|- valign="top" | |||
| '''authors''': | |||
| Amlan Ganguly, Sergi Abadal, Ishan Thakkar, Natalie Enright Jerger,<br>[[Marc Riedel]], Masoud Babaie, Rajeev Balasubramonian,<br>Abu Sebastian, Sudeep Pasricha, and Baris Taskin | |||
|- valign="top" | |||
| '''appeared in''': | |||
| [https://ieeexplore.ieee.org/document/9714013 IEEE_Micro], Vol. 42, No. 3, pp. 40–49, 2022 | |||
|} | |} | ||
| width="70" align="center" | | | width="70" align="center" | | ||
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== Theses == | == Theses == | ||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/4/4c/Kaslewicz_jake_random_access_dna_registers.pdf Carving a Random Access DNA Registers] | |||
|- valign="top" | |||
| '''author''': | |||
| Jake Kaslewicz | |||
|- valign="top" | |||
| '''degree''': | |||
| M.S., [http://www.ece.umn.edu Electrical & Computer Engineering], [http://www.umn.edu University of Minnesota] | |||
|- | |||
| '''year''': | |||
| 2023 | |||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks"> | |||
[https://mriedel.ece.umn.edu/wiki/images/4/4c/Kaslewicz_jake_random_access_dna_registers.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[https://mriedel.ece.umn.edu/wiki/images/4/4c/Kaslewicz_jake_random_access_dna_registers.pdf M.S. Thesis] | |||
|} | |||
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<br> | <br> | ||
[[Image:Sponsors.jpg|center|500px]] | [[Image:Sponsors.jpg|center|500px]] | ||
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== Patents == | |||
{| | |||
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{| class="sortable" style="background:#F0E68C" | |||
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| 1. | |||
| width="600" | | |||
"[https://patentimages.storage.googleapis.com/14/1a/f4/2d0f33a9989b1c/US11018689.pdf Parallel Computing using Stochastic Circuits and Deterministic Shuffling Networks]"<br>Soheil Mohajer, Zhiheng Wang,Kiarash Bazargan, [[Marc Riedel]],<br>David J. Lilja, and Sayed Abdolrasoul Faraji<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/14/1a/f4/2d0f33a9989b1c/US11018689.pdf 11,018,689 B2], 2021 | |||
|- | |||
|2. | |||
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"[https://patentimages.storage.googleapis.com/37/d1/3c/fff3c490a66909/US20200401376A1.pdf Low Discrepancy Deterministic Bit-Stream Processing Using Sobol Sequences]"<br> [[M. Hassan Najafi]], David J. Lilja, [[Marc Riedel]], Kia Bazargan, Sayed A. Faraji, and Bengzhe Li<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/37/d1/3c/fff3c490a66909/US20200401376A1.pdf 20,200,401,376 A1], 2021 | |||
|- | |||
|3. | |||
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"[https://patentimages.storage.googleapis.com/f2/27/1a/81e865f0f8ffbf/US20200143234A1.pdf Sorting Networks using Unary Processing]" [[M. Hassan Najafi]], David J. Lilja, | |||
[[Marc Riedel]], and Kia Bazargan<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/f2/27/1a/81e865f0f8ffbf/US20200143234A1.pdf 20,200,143,234] A1, 2020 | |||
|- | |||
|4. | |||
| | |||
"[https://patentimages.storage.googleapis.com/4b/ad/2c/46c83fbdede4b1/US10520975.pdf Polysynchronous Stochastic Circuits]"<br>David J. Lilja, [[M. Hassan Najafi]], [[Marc Riedel]], and Kiarash Bazargan<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/4b/ad/2c/46c83fbdede4b1/US10520975.pdf 10,520,975 B2], 2019 | |||
|- | |||
|5. | |||
| | |||
"[https://patentimages.storage.googleapis.com/46/60/b8/0301c0e60e79bf/US10740686.pdf Stochastic Computation using Pulse-Width Modulated Signals]" [[M. Hassan Najafi]],<br>S Jamali-Zavareh, D. J. Lilja, [[Marc Riedel]], K. Bazargan, and R. Harjani<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/46/60/b8/0301c0e60e79bf/US10740686.pdf 10,740,686] B2, 2018 | |||
|- | |||
|6. | |||
| | |||
"[https://patentimages.storage.googleapis.com/51/e3/63/6ea37887bdc606/US10063255.pdf Stochastic Computing on Deterministic Bit Streams]"<br>[[Devon Jenson]] and [[Marc Riedel]]<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/51/e3/63/6ea37887bdc606/US10063255.pdf 10,063,255,] 2018 | |||
|- | |||
|7. | |||
| | |||
"[https://patentimages.storage.googleapis.com/32/1f/53/160f07c0044a2d/US7249341.pdf Synthesis of Cyclic Combinational Circuits]"<br>[[Marc Riedel]] and Jehoshua Bruck<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/32/1f/53/160f07c0044a2d/US7249341.pdf 7,249,341], 2007 | |||
|- | |||
|8. | |||
| | |||
"[https://patentimages.storage.googleapis.com/20/16/3e/bc3d27149d1d0c/US6128277.pdf A Reliable Array of Distributed Computing Nodes]"<br>Vincent Bohossian, Charles Fan, Paul LeMahieu, [[Marc Riedel]], Lihao Xu, and Jehoshua Bruck<br>U.S. Patent No. [https://patentimages.storage.googleapis.com/20/16/3e/bc3d27149d1d0c/US6128277.pdf 6,128,277], 2000 | |||
|} | |||
|} | |} |
Latest revision as of 12:31, 8 June 2024
Here are links to our research output. When several version of a paper were published, for instance one in conference proceedings and another in a journal, these are grouped together and only the most significant version is linked. All materials are subject to copyrights.
Storing with Molecules
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Computing with Molecules
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Computing about Molecules
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Computing with Random Bit Streams
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Computing with Emerging Technology
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Computing with Feedback
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Algorithms and Data Structures
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Information Theory & Mathematics
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Theses
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Funding Proposals
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Patents
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